Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VTA1Vesicle trafficking 1. (301 aa)    
Predicted Functional Partners:
ENSVPAP00000001202
annotation not available
   
 0.999
VPS4B
Vacuolar protein sorting 4 homolog B.
   
 0.999
IST1
IST1 factor associated with ESCRT-III.
   
 
 0.980
ENSVPAP00000000792
annotation not available
   
 
 0.972
CHMP4B
Charged multivesicular body protein 4B.
   
 0.964
CHMP4C
Charged multivesicular body protein 4C.
   
 0.963
GCH1
GTP cyclohydrolase 1.
   
   0.938
BCAS2
BCAS2 pre-mRNA processing factor.
   
   0.935
SORBS2
Sorbin and SH3 domain containing 2.
    
 
 0.933
ENSVPAP00000000406
annotation not available
   
 0.874
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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