Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC17Zinc finger CCHC-type containing 17. (238 aa)    
Predicted Functional Partners:
ENSVPAP00000008533
annotation not available
   
 0.900
ENSVPAP00000002896
annotation not available
   
 0.873
SLU7
SLU7 homolog, splicing factor.
   
 0.873
CDC40
Cell division cycle 40.
   
 0.872
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.858
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.855
UTP18
UTP18 small subunit processome component.
   
 0.852
NCBP2
Nuclear cap binding protein subunit 2.
   
 0.849
ENSVPAP00000002538
annotation not available
   
 0.841
ENSVPAP00000010694
annotation not available
    
 0.837
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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