Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHX9LIM homeobox 9. (339 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.965
LDB2
LIM domain binding 2.
    
 0.957
LMO3
LIM domain only 3.
   
 
 0.936
KHK
Ketohexokinase.
    
   0.859
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.800
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.800
ENSVPAP00000003396
annotation not available
    
   0.777
EBF1
EBF transcription factor 1.
   
 
 0.737
EBF2
EBF transcription factor 2.
   
 
 0.737
DMRT2
Doublesex and mab-3 related transcription factor 2.
    
 
 0.704
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.