Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDE1APhosphodiesterase 1A. (510 aa)    
Predicted Functional Partners:
CALM1
Calmodulin 2.
    
 0.970
CALML4
Calmodulin like 4.
    
 0.963
GNAT3
G protein subunit alpha transducin 3.
     
 0.932
ENTPD3
Ectonucleoside triphosphate diphosphohydrolase 3.
     
 0.919
ENPP3
Ectonucleotide pyrophosphatase/phosphodiesterase 3.
     
 0.914
ENPP1
Ectonucleotide pyrophosphatase/phosphodiesterase 1.
     
 0.914
AK3
Adenylate kinase 3.
     
 0.911
AMPD1
Adenosine monophosphate deaminase 1.
     
 0.908
ENTPD5
Ectonucleoside triphosphate diphosphohydrolase 5 (inactive).
     
 0.904
ADK
Adenosine kinase.
     
 0.903
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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