PDF protein (Vicugna pacos) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

Experiments

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[Homology]

Score

PDF

Peptide deformylase, mitochondrial. (190 aa)

Predicted Functional Partners:

MTFMT

0.923

ENSVPAP00000001712

0.860

MRPL17

0.781

MCOLN2

0.779

MRRF

0.778

ENSVPAP00000001767

0.749

METAP1

0.737

MRPS16

0.737

ENSVPAP00000002056

0.723

ENSVPAP00000001701

0.721

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVPAP00000001701	ENSVPAP00000001712	ENSVPAP00000001701	ENSVPAP00000001712	annotation not available	annotation not available	0.478
ENSVPAP00000001701	ENSVPAP00000001767	ENSVPAP00000001701	ENSVPAP00000001767	annotation not available	annotation not available	0.997
ENSVPAP00000001701	ENSVPAP00000002056	ENSVPAP00000001701	ENSVPAP00000002056	annotation not available	annotation not available	0.997
ENSVPAP00000001701	MRPL17	ENSVPAP00000001701	ENSVPAP00000008254	annotation not available	Mitochondrial ribosomal protein L17.	0.995
ENSVPAP00000001701	MRPS16	ENSVPAP00000001701	ENSVPAP00000006753	annotation not available	Mitochondrial ribosomal protein S16.	0.993
ENSVPAP00000001701	MRRF	ENSVPAP00000001701	ENSVPAP00000008029	annotation not available	Mitochondrial ribosome recycling factor.	0.965
ENSVPAP00000001701	PDF	ENSVPAP00000001701	ENSVPAP00000003706	annotation not available	Peptide deformylase, mitochondrial.	0.721
ENSVPAP00000001712	ENSVPAP00000001701	ENSVPAP00000001712	ENSVPAP00000001701	annotation not available	annotation not available	0.478
ENSVPAP00000001712	MRPL17	ENSVPAP00000001712	ENSVPAP00000008254	annotation not available	Mitochondrial ribosomal protein L17.	0.439
ENSVPAP00000001712	MRRF	ENSVPAP00000001712	ENSVPAP00000008029	annotation not available	Mitochondrial ribosome recycling factor.	0.422
ENSVPAP00000001712	PDF	ENSVPAP00000001712	ENSVPAP00000003706	annotation not available	Peptide deformylase, mitochondrial.	0.860
ENSVPAP00000001767	ENSVPAP00000001701	ENSVPAP00000001767	ENSVPAP00000001701	annotation not available	annotation not available	0.997
ENSVPAP00000001767	ENSVPAP00000002056	ENSVPAP00000001767	ENSVPAP00000002056	annotation not available	annotation not available	0.997
ENSVPAP00000001767	METAP1	ENSVPAP00000001767	ENSVPAP00000005632	annotation not available	Methionyl aminopeptidase 1.	0.409
ENSVPAP00000001767	MRPL17	ENSVPAP00000001767	ENSVPAP00000008254	annotation not available	Mitochondrial ribosomal protein L17.	0.995
ENSVPAP00000001767	MRPS16	ENSVPAP00000001767	ENSVPAP00000006753	annotation not available	Mitochondrial ribosomal protein S16.	0.993
ENSVPAP00000001767	MRRF	ENSVPAP00000001767	ENSVPAP00000008029	annotation not available	Mitochondrial ribosome recycling factor.	0.905
ENSVPAP00000001767	MTFMT	ENSVPAP00000001767	ENSVPAP00000010967	annotation not available	Mitochondrial methionyl-tRNA formyltransferase.	0.571
ENSVPAP00000001767	PDF	ENSVPAP00000001767	ENSVPAP00000003706	annotation not available	Peptide deformylase, mitochondrial.	0.749
ENSVPAP00000002056	ENSVPAP00000001701	ENSVPAP00000002056	ENSVPAP00000001701	annotation not available	annotation not available	0.997