Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NIP7Nucleolar pre-rRNA processing protein NIP7. (180 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 
 0.996
WDR12
WD repeat domain 12.
   
 
 0.995
BRIX1
Biogenesis of ribosomes BRX1.
   
 
 0.995
EBNA1BP2
EBNA1 binding protein 2.
   
 
 0.994
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.994
ENSVPAP00000011511
annotation not available
   
 
 0.994
RBM28
RNA binding motif protein 28.
   
 
 0.993
NSUN6
NOP2/Sun RNA methyltransferase 6.
  
 
 0.993
RPF1
Ribosome production factor 1 homolog.
   
 
 0.991
MAK16
MAK16 homolog.
   
 
 0.991
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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