Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM2D1TM2 domain containing 1. (248 aa)    
Predicted Functional Partners:
TM2D2
TM2 domain containing 2.
   
  
 0.909
FAM92A
Family with sequence similarity 92 member A.
      
 0.808
RCAN3
RCAN family member 3.
      
 0.788
NHLRC2
NHL repeat containing 2.
      
 0.767
TRDMT1
tRNA aspartic acid methyltransferase 1.
      
 0.753
FBXO4
F-box protein 4.
   
  
 0.688
STX6
Syntaxin 6.
      
 0.685
VPS4B
Vacuolar protein sorting 4 homolog B.
      
 0.680
ENSVPAP00000003968
annotation not available
      
 0.655
HECTD2
HECT domain E3 ubiquitin protein ligase 2.
      
 0.650
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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