ISOC1 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ISOC1

Isochorismatase domain containing 1. (195 aa)

Predicted Functional Partners:

ENSVPAP00000002327

0.839

ENSVPAP00000009754

0.814

ENSVPAP00000007234

0.774

ENSVPAP00000002557

0.765

NIT2

0.762

ENSVPAP00000007631

0.757

NMNAT2

0.757

NMNAT1

0.757

MYL12A

0.742

PEX3

0.736

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVPAP00000002327	ENSVPAP00000002557	ENSVPAP00000002327	ENSVPAP00000002557	annotation not available	annotation not available	0.603
ENSVPAP00000002327	ISOC1	ENSVPAP00000002327	ENSVPAP00000003786	annotation not available	Isochorismatase domain containing 1.	0.839
ENSVPAP00000002327	PEX3	ENSVPAP00000002327	ENSVPAP00000003543	annotation not available	Peroxisomal biogenesis factor 3.	0.689
ENSVPAP00000002557	ENSVPAP00000002327	ENSVPAP00000002557	ENSVPAP00000002327	annotation not available	annotation not available	0.603
ENSVPAP00000002557	ISOC1	ENSVPAP00000002557	ENSVPAP00000003786	annotation not available	Isochorismatase domain containing 1.	0.765
ENSVPAP00000007234	ISOC1	ENSVPAP00000007234	ENSVPAP00000003786	annotation not available	Isochorismatase domain containing 1.	0.774
ENSVPAP00000007234	PEX3	ENSVPAP00000007234	ENSVPAP00000003543	annotation not available	Peroxisomal biogenesis factor 3.	0.627
ENSVPAP00000007631	ISOC1	ENSVPAP00000007631	ENSVPAP00000003786	annotation not available	Isochorismatase domain containing 1.	0.757
ENSVPAP00000007631	NIT2	ENSVPAP00000007631	ENSVPAP00000004993	annotation not available	Nitrilase family member 2.	0.590
ENSVPAP00000007631	NMNAT1	ENSVPAP00000007631	ENSVPAP00000008414	annotation not available	Nicotinamide nucleotide adenylyltransferase 1.	0.937
ENSVPAP00000007631	NMNAT2	ENSVPAP00000007631	ENSVPAP00000007807	annotation not available	Nicotinamide nucleotide adenylyltransferase 2.	0.539
ENSVPAP00000009754	ISOC1	ENSVPAP00000009754	ENSVPAP00000003786	annotation not available	Isochorismatase domain containing 1.	0.814
ISOC1	ENSVPAP00000002327	ENSVPAP00000003786	ENSVPAP00000002327	Isochorismatase domain containing 1.	annotation not available	0.839
ISOC1	ENSVPAP00000002557	ENSVPAP00000003786	ENSVPAP00000002557	Isochorismatase domain containing 1.	annotation not available	0.765
ISOC1	ENSVPAP00000007234	ENSVPAP00000003786	ENSVPAP00000007234	Isochorismatase domain containing 1.	annotation not available	0.774
ISOC1	ENSVPAP00000007631	ENSVPAP00000003786	ENSVPAP00000007631	Isochorismatase domain containing 1.	annotation not available	0.757
ISOC1	ENSVPAP00000009754	ENSVPAP00000003786	ENSVPAP00000009754	Isochorismatase domain containing 1.	annotation not available	0.814
ISOC1	MYL12A	ENSVPAP00000003786	ENSVPAP00000001761	Isochorismatase domain containing 1.	Myosin light chain 12A.	0.742
ISOC1	NIT2	ENSVPAP00000003786	ENSVPAP00000004993	Isochorismatase domain containing 1.	Nitrilase family member 2.	0.762
ISOC1	NMNAT1	ENSVPAP00000003786	ENSVPAP00000008414	Isochorismatase domain containing 1.	Nicotinamide nucleotide adenylyltransferase 1.	0.757