CSMD3 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

CSMD3

CUB and Sushi multiple domains 3. (3592 aa)

Predicted Functional Partners:

ENSVPAP00000007906

0.689

TRPS1

0.687

ENSVPAP00000008621

0.687

MYO3B

0.679

ENSVPAP00000007442

0.674

DPH6

0.665

PPP1R1C

0.659

LAMA2

0.656

TNC

0.635

TNN

0.635

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSMD3	DPH6	ENSVPAP00000003852	ENSVPAP00000009893	CUB and Sushi multiple domains 3.	Diphthamine biosynthesis 6.	0.665
CSMD3	ENSVPAP00000007442	ENSVPAP00000003852	ENSVPAP00000007442	CUB and Sushi multiple domains 3.	annotation not available	0.674
CSMD3	ENSVPAP00000007906	ENSVPAP00000003852	ENSVPAP00000007906	CUB and Sushi multiple domains 3.	annotation not available	0.689
CSMD3	ENSVPAP00000008621	ENSVPAP00000003852	ENSVPAP00000008621	CUB and Sushi multiple domains 3.	annotation not available	0.687
CSMD3	LAMA2	ENSVPAP00000003852	ENSVPAP00000001128	CUB and Sushi multiple domains 3.	Laminin subunit alpha 2.	0.656
CSMD3	MYO3B	ENSVPAP00000003852	ENSVPAP00000011798	CUB and Sushi multiple domains 3.	Myosin IIIB.	0.679
CSMD3	PPP1R1C	ENSVPAP00000003852	ENSVPAP00000003683	CUB and Sushi multiple domains 3.	Protein phosphatase 1 regulatory inhibitor subunit 1C.	0.659
CSMD3	TNC	ENSVPAP00000003852	ENSVPAP00000006281	CUB and Sushi multiple domains 3.	Tenascin C.	0.635
CSMD3	TNN	ENSVPAP00000003852	ENSVPAP00000008090	CUB and Sushi multiple domains 3.	Tenascin N.	0.635
CSMD3	TRPS1	ENSVPAP00000003852	ENSVPAP00000002002	CUB and Sushi multiple domains 3.	Transcriptional repressor GATA binding 1.	0.687
DPH6	CSMD3	ENSVPAP00000009893	ENSVPAP00000003852	Diphthamine biosynthesis 6.	CUB and Sushi multiple domains 3.	0.665
DPH6	MYO3B	ENSVPAP00000009893	ENSVPAP00000011798	Diphthamine biosynthesis 6.	Myosin IIIB.	0.660
DPH6	PPP1R1C	ENSVPAP00000009893	ENSVPAP00000003683	Diphthamine biosynthesis 6.	Protein phosphatase 1 regulatory inhibitor subunit 1C.	0.662
ENSVPAP00000007442	CSMD3	ENSVPAP00000007442	ENSVPAP00000003852	annotation not available	CUB and Sushi multiple domains 3.	0.674
ENSVPAP00000007442	ENSVPAP00000007906	ENSVPAP00000007442	ENSVPAP00000007906	annotation not available	annotation not available	0.680
ENSVPAP00000007442	LAMA2	ENSVPAP00000007442	ENSVPAP00000001128	annotation not available	Laminin subunit alpha 2.	0.671
ENSVPAP00000007906	CSMD3	ENSVPAP00000007906	ENSVPAP00000003852	annotation not available	CUB and Sushi multiple domains 3.	0.689
ENSVPAP00000007906	ENSVPAP00000007442	ENSVPAP00000007906	ENSVPAP00000007442	annotation not available	annotation not available	0.680
ENSVPAP00000007906	LAMA2	ENSVPAP00000007906	ENSVPAP00000001128	annotation not available	Laminin subunit alpha 2.	0.676
ENSVPAP00000008621	CSMD3	ENSVPAP00000008621	ENSVPAP00000003852	annotation not available	CUB and Sushi multiple domains 3.	0.687