RNGTT protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNGTT

RNA guanylyltransferase and 5'-phosphatase. (597 aa)

Predicted Functional Partners:

ENSVPAP00000007452

0.996

ENSVPAP00000008227

0.977

POLR2C

0.973

POLR2D

0.964

POLR2G

0.964

NUP50

0.952

ENSVPAP00000006584

0.936

CMTR1

0.932

POLR2K

0.931

POLR2B

0.927

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMTR1	ENSVPAP00000007452	ENSVPAP00000003135	ENSVPAP00000007452	Cap methyltransferase 1.	annotation not available	0.521
CMTR1	RNGTT	ENSVPAP00000003135	ENSVPAP00000003876	Cap methyltransferase 1.	RNA guanylyltransferase and 5'-phosphatase.	0.932
ENSVPAP00000006584	ENSVPAP00000007452	ENSVPAP00000006584	ENSVPAP00000007452	annotation not available	annotation not available	0.684
ENSVPAP00000006584	ENSVPAP00000008227	ENSVPAP00000006584	ENSVPAP00000008227	annotation not available	annotation not available	0.999
ENSVPAP00000006584	POLR2B	ENSVPAP00000006584	ENSVPAP00000000439	annotation not available	RNA polymerase II subunit B.	0.999
ENSVPAP00000006584	POLR2C	ENSVPAP00000006584	ENSVPAP00000007059	annotation not available	RNA polymerase II subunit C.	0.998
ENSVPAP00000006584	POLR2D	ENSVPAP00000006584	ENSVPAP00000006729	annotation not available	RNA polymerase II subunit D.	0.999
ENSVPAP00000006584	POLR2G	ENSVPAP00000006584	ENSVPAP00000008869	annotation not available	RNA polymerase II subunit G.	0.999
ENSVPAP00000006584	POLR2K	ENSVPAP00000006584	ENSVPAP00000008962	annotation not available	RNA polymerase II subunit K.	0.999
ENSVPAP00000006584	RNGTT	ENSVPAP00000006584	ENSVPAP00000003876	annotation not available	RNA guanylyltransferase and 5'-phosphatase.	0.936
ENSVPAP00000007452	CMTR1	ENSVPAP00000007452	ENSVPAP00000003135	annotation not available	Cap methyltransferase 1.	0.521
ENSVPAP00000007452	ENSVPAP00000006584	ENSVPAP00000007452	ENSVPAP00000006584	annotation not available	annotation not available	0.684
ENSVPAP00000007452	ENSVPAP00000008227	ENSVPAP00000007452	ENSVPAP00000008227	annotation not available	annotation not available	0.938
ENSVPAP00000007452	POLR2B	ENSVPAP00000007452	ENSVPAP00000000439	annotation not available	RNA polymerase II subunit B.	0.887
ENSVPAP00000007452	POLR2C	ENSVPAP00000007452	ENSVPAP00000007059	annotation not available	RNA polymerase II subunit C.	0.781
ENSVPAP00000007452	POLR2D	ENSVPAP00000007452	ENSVPAP00000006729	annotation not available	RNA polymerase II subunit D.	0.670
ENSVPAP00000007452	POLR2G	ENSVPAP00000007452	ENSVPAP00000008869	annotation not available	RNA polymerase II subunit G.	0.724
ENSVPAP00000007452	POLR2K	ENSVPAP00000007452	ENSVPAP00000008962	annotation not available	RNA polymerase II subunit K.	0.709
ENSVPAP00000007452	RNGTT	ENSVPAP00000007452	ENSVPAP00000003876	annotation not available	RNA guanylyltransferase and 5'-phosphatase.	0.996
ENSVPAP00000008227	ENSVPAP00000006584	ENSVPAP00000008227	ENSVPAP00000006584	annotation not available	annotation not available	0.999