Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PNRC1Proline rich nuclear receptor coactivator 1. (327 aa)    
Predicted Functional Partners:
DCP1A
Decapping mRNA 1A.
    
 
 0.988
DDX6
DEAD-box helicase 6.
    
 
 0.895
TRIM55
Tripartite motif containing 55.
      
 0.691
CMTR1
Cap methyltransferase 1.
      
 0.688
DCP2
Decapping mRNA 2.
      
 0.687
CASC3
CASC3 exon junction complex subunit.
     
 0.682
TRIM52
Tripartite motif containing 52.
      
 0.682
ENSVPAP00000001342
annotation not available
      
 0.661
PM20D2
Peptidase M20 domain containing 2.
 
    
 0.655
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
     
 0.635
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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