Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PPP1R42Protein phosphatase 1 regulatory subunit 42. (185 aa)    
Predicted Functional Partners:
COPS6
COP9 signalosome subunit 6.
   
 0.970
COPS4
COP9 signalosome subunit 4.
   
 0.970
COPS2
COP9 signalosome subunit 2.
   
 0.969
ENSVPAP00000009618
annotation not available
   
 0.963
COPS7B
COP9 signalosome subunit 7B.
    
 0.958
SKP1
S-phase kinase associated protein 1.
   
 0.950
DDB1
Damage specific DNA binding protein 1.
    
 0.914
NEDD8
NEDD8 ubiquitin like modifier.
   
 0.906
CUL4B
Cullin 4B.
    
 0.905
CUL2
Cullin 2.
   
 0.900
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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