Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL21A1Collagen type XXI alpha 1 chain. (954 aa)    
Predicted Functional Partners:
ENSVPAP00000001668
annotation not available
   
 0.974
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.906
COL4A6
Collagen type IV alpha 6 chain.
    
 0.885
ENSVPAP00000003994
annotation not available
   
 0.850
STK17B
Serine/threonine kinase 17b.
    
 0.798
COL24A1
Collagen type XXIV alpha 1 chain.
     
 0.775
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
    
 0.735
ENSVPAP00000010340
annotation not available
    
 0.735
COL15A1
Collagen type XV alpha 1 chain.
    
 0.731
BEND6
BEN domain containing 6.
      
 0.692
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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