Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000003952annotation not available (540 aa)    
Predicted Functional Partners:
SMAD9
SMAD family member 9.
    
 
 0.967
BANF1
Barrier to autointegration factor 1.
    
 0.966
SMAD1
SMAD family member 1.
    
 
 0.953
LMNB1
Lamin B1.
    
 0.951
LMNTD1
Lamin tail domain containing 1.
    
 0.940
SMAD2
SMAD family member 2.
    
 
 0.933
SMAD5
SMAD family member 5.
    
 
 0.898
TMPO
Thymopoietin.
   
 0.894
RBM25
RNA binding motif protein 25.
   
 0.812
CDC5L
Cell division cycle 5 like.
   
   0.784
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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