Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS35VPS35 retromer complex component. (796 aa)    
Predicted Functional Partners:
VPS26A
VPS26, retromer complex component A.
   
 0.999
VPS29
VPS29 retromer complex component.
   
 0.999
SNX3
Sorting nexin 3.
   
 0.998
SNX2
Sorting nexin 2.
   
 0.998
SNX27
Sorting nexin 27.
   
 
 0.994
SNX1
Sorting nexin 1.
   
 
 0.993
TBC1D5
TBC1 domain family member 5.
   
 
 0.987
SNX12
Sorting nexin 12.
   
 0.986
RAB7A
RAB7A, member RAS oncogene family.
   
 
 0.980
FKBP15
FKBP prolyl isomerase 15.
   
 
 0.971
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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