Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BARD1BRCA1 associated RING domain 1. (679 aa)    
Predicted Functional Partners:
BRCA1
BRCA1 DNA repair associated.
   
0.999
RBBP8
RB binding protein 8, endonuclease.
    
 0.999
BRCA2
BRCA2 DNA repair associated.
   
 0.997
RAD51
RAD51 recombinase.
  
 0.997
BRCC3
BRCA1/BRCA2-containing complex subunit 3.
    
 0.994
TOPBP1
DNA topoisomerase II binding protein 1.
   
 0.994
ENSVPAP00000003155
annotation not available
    
 0.994
ABRAXAS1
Abraxas 1, BRCA1 A complex subunit.
    
 0.994
MRE11
MRE11 homolog, double strand break repair nuclease.
   
 0.993
UIMC1
Ubiquitin interaction motif containing 1.
    
 0.993
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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