Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTPN13Protein tyrosine phosphatase non-receptor type 13. (2454 aa)    
Predicted Functional Partners:
PLEKHA2
Pleckstrin homology domain containing A2.
    
 0.961
ENSVPAP00000005234
annotation not available
    
 
 0.918
ENSVPAP00000005568
annotation not available
   
   0.918
ENSVPAP00000006127
annotation not available
    
   0.892
PLEKHA1
Pleckstrin homology domain containing A1.
     
  0.885
ENSVPAP00000007457
annotation not available
    
   0.812
RND2
Rho family GTPase 2.
    
  0.701
TMLHE
Trimethyllysine hydroxylase, epsilon.
      
 0.689
PDCD4
Programmed cell death 4.
      
 0.680
NMRK1
Nicotinamide riboside kinase 1.
    
 
 0.672
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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