RANBP3L protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RANBP3L

RAN binding protein 3 like. (464 aa)

Predicted Functional Partners:

CDC123

0.739

ZNF608

0.684

NUDT5

0.680

KATNAL2

0.625

CAMKV

0.597

ENSVPAP00000010065

0.588

LIFR

0.524

ZNF25

0.522

ENSVPAP00000006838

0.518

SFXN2

0.517

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAMKV	CDC123	ENSVPAP00000011223	ENSVPAP00000006294	CaM kinase like vesicle associated.	Cell division cycle 123.	0.605
CAMKV	NUDT5	ENSVPAP00000011223	ENSVPAP00000006292	CaM kinase like vesicle associated.	Nudix hydrolase 5.	0.583
CAMKV	RANBP3L	ENSVPAP00000011223	ENSVPAP00000004062	CaM kinase like vesicle associated.	RAN binding protein 3 like.	0.597
CDC123	CAMKV	ENSVPAP00000006294	ENSVPAP00000011223	Cell division cycle 123.	CaM kinase like vesicle associated.	0.605
CDC123	NUDT5	ENSVPAP00000006294	ENSVPAP00000006292	Cell division cycle 123.	Nudix hydrolase 5.	0.917
CDC123	RANBP3L	ENSVPAP00000006294	ENSVPAP00000004062	Cell division cycle 123.	RAN binding protein 3 like.	0.739
ENSVPAP00000006838	RANBP3L	ENSVPAP00000006838	ENSVPAP00000004062	annotation not available	RAN binding protein 3 like.	0.518
ENSVPAP00000006838	ZNF608	ENSVPAP00000006838	ENSVPAP00000010481	annotation not available	Zinc finger protein 608.	0.450
ENSVPAP00000010065	RANBP3L	ENSVPAP00000010065	ENSVPAP00000004062	annotation not available	RAN binding protein 3 like.	0.588
KATNAL2	LIFR	ENSVPAP00000005751	ENSVPAP00000004078	Katanin catalytic subunit A1 like 2.	LIF receptor subunit alpha.	0.675
KATNAL2	RANBP3L	ENSVPAP00000005751	ENSVPAP00000004062	Katanin catalytic subunit A1 like 2.	RAN binding protein 3 like.	0.625
LIFR	KATNAL2	ENSVPAP00000004078	ENSVPAP00000005751	LIF receptor subunit alpha.	Katanin catalytic subunit A1 like 2.	0.675
LIFR	RANBP3L	ENSVPAP00000004078	ENSVPAP00000004062	LIF receptor subunit alpha.	RAN binding protein 3 like.	0.524
NUDT5	CAMKV	ENSVPAP00000006292	ENSVPAP00000011223	Nudix hydrolase 5.	CaM kinase like vesicle associated.	0.583
NUDT5	CDC123	ENSVPAP00000006292	ENSVPAP00000006294	Nudix hydrolase 5.	Cell division cycle 123.	0.917
NUDT5	RANBP3L	ENSVPAP00000006292	ENSVPAP00000004062	Nudix hydrolase 5.	RAN binding protein 3 like.	0.680
RANBP3L	CAMKV	ENSVPAP00000004062	ENSVPAP00000011223	RAN binding protein 3 like.	CaM kinase like vesicle associated.	0.597
RANBP3L	CDC123	ENSVPAP00000004062	ENSVPAP00000006294	RAN binding protein 3 like.	Cell division cycle 123.	0.739
RANBP3L	ENSVPAP00000006838	ENSVPAP00000004062	ENSVPAP00000006838	RAN binding protein 3 like.	annotation not available	0.518
RANBP3L	ENSVPAP00000010065	ENSVPAP00000004062	ENSVPAP00000010065	RAN binding protein 3 like.	annotation not available	0.588