Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDC4Enhancer of mRNA decapping 4. (1371 aa)    
Predicted Functional Partners:
DCP1A
Decapping mRNA 1A.
    
 0.999
ENSVPAP00000003241
annotation not available
   
 0.999
DDX6
DEAD-box helicase 6.
   
 0.999
DCP2
Decapping mRNA 2.
    
 0.999
XRN1
5'-3' exoribonuclease 1.
    
 
 0.992
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.985
LSM14A
LSM14A mRNA processing body assembly factor.
    
 
 0.973
ALDH18A1
Aldehyde dehydrogenase 18 family member A1.
    
   0.924
FBXO16
F-box protein 16.
   
   0.881
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
  
 0.859
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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