Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JMJD6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (379 aa)    
Predicted Functional Partners:
ENSVPAP00000005996
annotation not available
    
 
 0.978
PRPF40A
pre-mRNA processing factor 40 homolog A.
    
   0.921
PRPF38A
pre-mRNA processing factor 38A.
   
 
 0.881
ENSVPAP00000006954
annotation not available
   
 
 0.860
CPSF6
Cleavage and polyadenylation specific factor 6.
    
 
 0.846
LUC7L
LUC7 like.
   
 
 0.844
BRDT
Bromodomain testis associated.
    
 
 0.842
BRD2
Bromodomain containing 2.
    
 
 0.840
ENSVPAP00000000555
annotation not available
    
 
 0.839
RBM39
RNA binding motif protein 39.
    
 
 0.835
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.