Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000004136annotation not available (215 aa)    
Predicted Functional Partners:
HMGB4
High mobility group box 4.
   
  0.998
TLR4
Toll like receptor 4.
    
 0.991
HMGB3
High mobility group box 3.
   
   0.969
ENSVPAP00000010436
annotation not available
    
 0.960
SEC23IP
SEC23 interacting protein.
   
   0.953
PDIA3
Protein disulfide isomerase family A member 3.
   
 
 0.861
ENSVPAP00000005586
annotation not available
      
 0.850
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
  0.845
BAP1
BRCA1 associated protein 1.
    
  0.843
SIRT1
Sirtuin 1.
    
 
 0.834
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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