Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYRM7LYR motif containing 7. (98 aa)    
Predicted Functional Partners:
UQCRFS1
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.
    
 0.999
NDUFAB1
NADH:ubiquinone oxidoreductase subunit AB1.
    
 
 0.928
ENSVPAP00000003541
annotation not available
     
 0.857
UBXN7
UBX domain protein 7.
    
   0.850
MRPL3
Mitochondrial ribosomal protein L3.
   
 
 0.779
FXN
Frataxin.
     
 0.778
MRPL19
Mitochondrial ribosomal protein L19.
   
 
 0.778
MRPL46
Mitochondrial ribosomal protein L46.
   
 
 0.769
ENSVPAP00000002056
annotation not available
   
 
 0.712
CDC42SE2
CDC42 small effector 2.
    
 0.712
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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