Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LAMA1Laminin subunit alpha 1. (2935 aa)    
Predicted Functional Partners:
LAMC1
Laminin subunit gamma 1.
   
 0.896
ENSVPAP00000000769
annotation not available
    
   0.892
ENSVPAP00000003396
annotation not available
    
   0.828
NID2
Nidogen 2.
   
 0.738
TBK1
TANK binding kinase 1.
    
 0.690
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.690
ENSVPAP00000011106
annotation not available
    
 
 0.672
CFAP43
Cilia and flagella associated protein 43.
   
 
 0.662
EFHB
EF-hand domain family member B.
   
   0.642
TNFAIP6
TNF alpha induced protein 6.
    
 
 0.632
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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