Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AATFApoptosis antagonizing transcription factor. (471 aa)    
Predicted Functional Partners:
NOL10
Nucleolar protein 10.
   
 
 0.996
NGDN
Neuroguidin.
   
 
 0.995
DDX52
DExD-box helicase 52.
   
 
 0.993
ENSVPAP00000002896
annotation not available
   
 
 0.992
DDX10
DEAD-box helicase 10.
   
 
 0.992
BYSL
Bystin like.
   
 
 0.989
BMS1
BMS1 ribosome biogenesis factor.
   
 
 0.989
WDR3
WD repeat domain 3.
   
 
 0.988
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.988
WDR43
WD repeat domain 43.
   
 
 0.985
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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