ZSCAN21 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ZSCAN21

Zinc finger and SCAN domain containing 21. (473 aa)

Predicted Functional Partners:

ENSVPAP00000004674

0.964

ZSCAN29

0.923

ENSVPAP00000011246

0.889

ZKSCAN5

0.815

ENSVPAP00000002606

0.780

ENSVPAP00000001104

0.660

BEND3

0.614

NOX4

0.603

ENSVPAP00000003396

0.582

ENSVPAP00000004838

0.563

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BEND3	ZSCAN21	ENSVPAP00000010589	ENSVPAP00000004190	BEN domain containing 3.	Zinc finger and SCAN domain containing 21.	0.614
ENSVPAP00000001104	ZSCAN21	ENSVPAP00000001104	ENSVPAP00000004190	annotation not available	Zinc finger and SCAN domain containing 21.	0.660
ENSVPAP00000002606	ENSVPAP00000003396	ENSVPAP00000002606	ENSVPAP00000003396	annotation not available	annotation not available	0.582
ENSVPAP00000002606	ENSVPAP00000004674	ENSVPAP00000002606	ENSVPAP00000004674	annotation not available	annotation not available	0.965
ENSVPAP00000002606	ZSCAN21	ENSVPAP00000002606	ENSVPAP00000004190	annotation not available	Zinc finger and SCAN domain containing 21.	0.780
ENSVPAP00000002606	ZSCAN29	ENSVPAP00000002606	ENSVPAP00000005827	annotation not available	Zinc finger and SCAN domain containing 29.	0.924
ENSVPAP00000003396	ENSVPAP00000002606	ENSVPAP00000003396	ENSVPAP00000002606	annotation not available	annotation not available	0.582
ENSVPAP00000003396	ENSVPAP00000004674	ENSVPAP00000003396	ENSVPAP00000004674	annotation not available	annotation not available	0.582
ENSVPAP00000003396	ENSVPAP00000004838	ENSVPAP00000003396	ENSVPAP00000004838	annotation not available	annotation not available	0.582
ENSVPAP00000003396	ENSVPAP00000011246	ENSVPAP00000003396	ENSVPAP00000011246	annotation not available	annotation not available	0.582
ENSVPAP00000003396	NOX4	ENSVPAP00000003396	ENSVPAP00000010534	annotation not available	NADPH oxidase 4.	0.404
ENSVPAP00000003396	ZKSCAN5	ENSVPAP00000003396	ENSVPAP00000003989	annotation not available	Zinc finger with KRAB and SCAN domains 5.	0.582
ENSVPAP00000003396	ZSCAN21	ENSVPAP00000003396	ENSVPAP00000004190	annotation not available	Zinc finger and SCAN domain containing 21.	0.582
ENSVPAP00000003396	ZSCAN29	ENSVPAP00000003396	ENSVPAP00000005827	annotation not available	Zinc finger and SCAN domain containing 29.	0.582
ENSVPAP00000004674	ENSVPAP00000002606	ENSVPAP00000004674	ENSVPAP00000002606	annotation not available	annotation not available	0.965
ENSVPAP00000004674	ENSVPAP00000003396	ENSVPAP00000004674	ENSVPAP00000003396	annotation not available	annotation not available	0.582
ENSVPAP00000004674	ZKSCAN5	ENSVPAP00000004674	ENSVPAP00000003989	annotation not available	Zinc finger with KRAB and SCAN domains 5.	0.966
ENSVPAP00000004674	ZSCAN21	ENSVPAP00000004674	ENSVPAP00000004190	annotation not available	Zinc finger and SCAN domain containing 21.	0.964
ENSVPAP00000004674	ZSCAN29	ENSVPAP00000004674	ENSVPAP00000005827	annotation not available	Zinc finger and SCAN domain containing 29.	0.921
ENSVPAP00000004838	ENSVPAP00000003396	ENSVPAP00000004838	ENSVPAP00000003396	annotation not available	annotation not available	0.582