Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HTATSF1HIV-1 Tat specific factor 1. (691 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40.
     
 0.982
SF3B1
Splicing factor 3b subunit 1.
    
 
 0.980
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.976
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.969
DDX46
DEAD-box helicase 46.
   
 0.966
TCERG1
Transcription elongation regulator 1.
   
 
 0.963
SUGP1
SURP and G-patch domain containing 1.
     
 0.956
DDX5
DEAD-box helicase 5.
    
 0.954
DNAJC8
DnaJ heat shock protein family (Hsp40) member C8.
     
 0.951
DHX9
DExH-box helicase 9.
   
 0.950
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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