Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM6SF1Transmembrane 6 superfamily member 1. (341 aa)    
Predicted Functional Partners:
TMEM182
Transmembrane protein 182.
      
 0.912
ENSVPAP00000011608
annotation not available
      
 0.785
TSPAN33
Tetraspanin 33.
      
 0.741
ENSVPAP00000010777
annotation not available
      
 0.692
BTBD1
BTB domain containing 1.
      
 0.665
MORF4L1
Mortality factor 4 like 1.
      
 0.609
EBPL
EBP like.
      
 0.520
PLXDC2
Plexin domain containing 2.
      
 0.508
G3BP1
G3BP stress granule assembly factor 1.
      
 0.499
ACSBG2
acyl-CoA synthetase bubblegum family member 2.
      
 0.498
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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