Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000004276annotation not available (1149 aa)    
Predicted Functional Partners:
ENSVPAP00000003296
annotation not available
    
 0.997
CDC40
Cell division cycle 40.
   
 0.996
SLU7
SLU7 homolog, splicing factor.
    
 0.995
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.993
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.993
NKAP
NFKB activating protein.
   
 0.993
ENSVPAP00000000065
annotation not available
    
  0.991
ENSVPAP00000011570
annotation not available
   
 0.990
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 0.981
C9orf78
Chromosome 9 open reading frame 78.
    
 0.981
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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