Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APAF1Apoptotic peptidase activating factor 1. (1247 aa)    
Predicted Functional Partners:
ENSVPAP00000006326
annotation not available
    
 0.999
ENSVPAP00000007653
annotation not available
    
 0.999
CASP3
Caspase 3.
    
 0.999
CASP9
Caspase 9.
    
 0.998
XIAP
X-linked inhibitor of apoptosis.
   
 0.978
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.973
NPVF
Neuropeptide VF precursor.
    
 0.965
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.958
ENSVPAP00000006667
annotation not available
    
 0.947
HSPA4
Heat shock protein family A (Hsp70) member 4.
    
 
 0.945
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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