Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PKP2Plakophilin 2. (708 aa)    
Predicted Functional Partners:
DSP
Desmoplakin.
   
 0.972
ENSVPAP00000010021
annotation not available
   
 0.964
DSG1
Desmoglein 1.
   
 0.925
DSG2
Desmoglein 2.
   
 0.925
DSG3
Desmoglein 3.
   
 0.907
DSC3
Desmocollin 3.
   
 0.877
DSC2
Desmocollin 2.
   
 0.877
DSC1
Desmocollin 1.
   
 0.877
PERP
P53 apoptosis effector related to PMP22.
   
 
 0.862
MACF1
Microtubule actin crosslinking factor 1.
   
 0.848
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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