Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNPRSynaptoporin. (259 aa)    
Predicted Functional Partners:
ENSVPAP00000009053
annotation not available
   
 0.969
SNAP25
Synaptosome associated protein 25.
   
 0.913
VAMP1
Vesicle associated membrane protein 1.
   
 0.850
RAB3B
RAB3B, member RAS oncogene family.
   
 0.823
VAMP3
Vesicle associated membrane protein 3.
   
 0.730
SLC17A8
Solute carrier family 17 member 8.
   
 
 0.693
BDNF
Brain derived neurotrophic factor.
      
 0.678
ENSVPAP00000002168
annotation not available
   
  
 0.676
FAM135A
Family with sequence similarity 135 member A.
      
 0.675
ACBD4
acyl-CoA binding domain containing 4.
      
 0.666
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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