Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHQ1SHQ1, H/ACA ribonucleoprotein assembly factor. (532 aa)    
Predicted Functional Partners:
ENSVPAP00000003015
annotation not available
   
 0.999
GAR1
GAR1 ribonucleoprotein.
   
 
 0.987
TRUB1
TruB pseudouridine synthase family member 1.
   
 0.961
NOP10
NOP10 ribonucleoprotein.
   
 
 0.959
NHP2
NHP2 ribonucleoprotein.
   
 
 0.870
ENSVPAP00000006681
annotation not available
   
 
 0.866
TRUB2
TruB pseudouridine synthase family member 2.
   
 0.809
NOP58
NOP58 ribonucleoprotein.
   
  
 0.706
RCL1
RNA terminal phosphate cyclase like 1.
   
  
 0.706
ENSVPAP00000004525
annotation not available
      
 0.689
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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