Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC42Leucine rich repeat containing 42. (428 aa)    
Predicted Functional Partners:
ENSVPAP00000006081
annotation not available
      
 0.757
TCEANC2
Transcription elongation factor A N-terminal and central domain containing 2.
      
 0.756
DCAF5
DDB1 and CUL4 associated factor 5.
      
 0.755
ENSVPAP00000000403
annotation not available
      
 0.741
ENSVPAP00000006020
annotation not available
      
 0.738
ZBTB21
Zinc finger and BTB domain containing 21.
      
 0.736
EXD2
Exonuclease 3'-5' domain containing 2.
      
 0.723
RIC8B
RIC8 guanine nucleotide exchange factor B.
      
 0.719
PHF20
PHD finger protein 20.
      
 0.685
HSPB11
Heat shock protein family B (small) member 11.
      
 0.674
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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