Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALKBH8alkB homolog 8, tRNA methyltransferase. (661 aa)    
Predicted Functional Partners:
ENSVPAP00000010881
annotation not available
      
 0.852
ALKBH1
alkB homolog 1, histone H2A dioxygenase.
      
 0.821
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.749
ENSVPAP00000008662
annotation not available
      
 0.739
NDUFS2
NADH:ubiquinone oxidoreductase core subunit S2.
   
  
 0.670
UQCRFS1
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.
     
 0.669
METTL5
Methyltransferase like 5.
      
 0.649
ENSVPAP00000010961
annotation not available
   
  
 0.634
RSF1
Remodeling and spacing factor 1.
   
  
 0.631
MIER1
MIER1 transcriptional regulator.
      
 0.624
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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