Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTBP1Latent transforming growth factor beta binding protein 1. (1551 aa)    
Predicted Functional Partners:
TGFB2
Transforming growth factor beta 2.
    
 0.995
LAMA2
Laminin subunit alpha 2.
    
 0.827
FKBP10
FKBP prolyl isomerase 10.
   
 
 0.764
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.744
MYPN
Myopalladin.
    
 0.734
ITGB6
Integrin subunit beta 6.
    
 0.690
ENSVPAP00000002921
annotation not available
   
 
 0.687
VGLL3
Vestigial like family member 3.
      
 0.687
COPZ2
Coatomer protein complex subunit zeta 2.
    
 
 0.670
LOX
Lysyl oxidase.
   
 
 0.663
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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