Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH9Cadherin 9. (789 aa)    
Predicted Functional Partners:
CDH18
Cadherin 18.
   
0.808
CDH8
Cadherin 8.
  
 
0.797
CDH10
Cadherin 10.
  
 
 
0.790
CTNND1
Catenin delta 1.
    
 0.783
CDH12
Cadherin 12.
  
 
 
0.773
CDH13
Cadherin 13.
     
0.769
CDH11
Cadherin 11.
  
  
 
0.750
CDH3
Cadherin 3.
     
 
0.705
CDH1
Cadherin 1.
     
 
0.705
KCNB2
Potassium voltage-gated channel subfamily B member 2.
   
  
 0.695
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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