Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM71F1Family with sequence similarity 71 member F1. (340 aa)    
Predicted Functional Partners:
RAB2B
RAB2B, member RAS oncogene family.
    
 0.647
RAB2A
RAB2A, member RAS oncogene family.
    
 0.647
TNC
Tenascin C.
    
  0.635
TNN
Tenascin N.
    
  0.635
TNR
Tenascin R.
    
  0.635
TMCO2
Transmembrane and coiled-coil domains 2.
  
   
 0.539
ENSVPAP00000009147
annotation not available
      
 0.508
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 0.487
HAPLN1
Hyaluronan and proteoglycan link protein 1.
    
  0.469
TMCO5A
Transmembrane and coiled-coil domains 5A.
  
   
 0.469
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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