Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCP1Lymphocyte cytosolic protein 1. (627 aa)    
Predicted Functional Partners:
PLS3
Plastin 3.
   
   0.969
CENPE
Centromere protein E.
    
   0.965
PLS1
Plastin 1.
   
   0.930
ENSVPAP00000006978
annotation not available
    
 0.889
ENSVPAP00000000399
annotation not available
    
 
 0.837
CD53
CD53 molecule.
   
    0.797
ENSVPAP00000003511
annotation not available
   
 
 0.763
ATXN2
Ataxin 2.
    
 
 0.737
COTL1
Coactosin like F-actin binding protein 1.
   
 
 0.730
ENSVPAP00000009711
annotation not available
    
 
 0.715
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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