Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTF2BGeneral transcription factor IIB. (316 aa)    
Predicted Functional Partners:
ENSVPAP00000008227
annotation not available
    
 0.996
POLR2D
RNA polymerase II subunit D.
    
 0.993
POLR2G
RNA polymerase II subunit G.
   
 0.993
POLR2H
RNA polymerase II subunit H.
    
 0.990
GTF2E1
General transcription factor IIE subunit 1.
    
 0.989
GTF2A1
General transcription factor IIA subunit 1.
   
 0.988
GTF2F2
General transcription factor IIF subunit 2.
    
 0.988
ENSVPAP00000000883
annotation not available
  
 0.986
TBP
TATA-box binding protein.
  
 0.986
POLR2B
RNA polymerase II subunit B.
    
 0.984
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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