Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TMLHETrimethyllysine hydroxylase, epsilon. (252 aa)    
Predicted Functional Partners:
AIFM2
Apoptosis inducing factor mitochondria associated 2.
      
 0.923
CDKAL1
CDK5 regulatory subunit associated protein 1 like 1.
      
 0.888
TRAT1
T-cell receptor-associated transmembrane adapter 1.
      
 0.750
BCAT1
Branched chain amino acid transaminase 1.
  
 
 0.745
ENSVPAP00000005521
annotation not available
    
 0.694
CRYL1
Crystallin lambda 1.
    
 0.694
PTPN13
Protein tyrosine phosphatase non-receptor type 13.
      
 0.689
TRIM36
Tripartite motif containing 36.
      
 0.678
SPRY3
Sprouty RTK signaling antagonist 3.
      
 0.665
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
   
 
 0.658
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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