Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RTCBRNA 2',3'-cyclic phosphate and 5'-OH ligase. (505 aa)    
Predicted Functional Partners:
FAM98B
Family with sequence similarity 98 member B.
   
 0.998
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
  
 0.997
DDX1
DEAD-box helicase 1.
   
 0.996
FAM98A
Family with sequence similarity 98 member A.
    
 0.995
RTRAF
RNA transcription, translation and transport factor.
   
 0.994
PYROXD1
Pyridine nucleotide-disulphide oxidoreductase domain 1.
  
 
 0.928
RTCA
RNA 3'-terminal phosphate cyclase.
  
  
 0.913
RCL1
RNA terminal phosphate cyclase like 1.
  
  
 0.784
MCC
MCC regulator of WNT signaling pathway.
  
  
 0.784
ENSVPAP00000007536
annotation not available
     
 0.710
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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