STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000005029annotation not available (670 aa)    
Predicted Functional Partners:
ENSVPAP00000009303
annotation not available
    
 
 0.967
PRPF4
pre-mRNA processing factor 4.
    
   0.965
PRPF3
pre-mRNA processing factor 3.
    
   0.965
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.965
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.961
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.957
ENSVPAP00000004485
annotation not available
    
   0.947
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.943
LARP7
La ribonucleoprotein 7, transcriptional regulator.
    
 0.943
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.942
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.