Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS45Vacuolar protein sorting 45 homolog. (568 aa)    
Predicted Functional Partners:
RBSN
Rabenosyn, RAB effector.
    
 0.999
STX6
Syntaxin 6.
    
 
 0.988
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.986
RAB5A
RAB5A, member RAS oncogene family.
    
 0.979
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 
 0.957
COG6
Component of oligomeric golgi complex 6.
    
 0.940
COG4
Component of oligomeric golgi complex 4.
   
 
 0.933
YKT6
YKT6 v-SNARE homolog.
    
 
 0.927
VAMP4
Vesicle associated membrane protein 4.
    
 
 0.926
STX8
Syntaxin 8.
    
 
 0.900
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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