Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABIFRAB interacting factor. (81 aa)    
Predicted Functional Partners:
RAB8A
RAB8A, member RAS oncogene family.
    
 
 0.961
ENSVPAP00000001538
annotation not available
    
 
 0.959
RAB1A
RAB1A, member RAS oncogene family.
    
 
 0.946
RAB3B
RAB3B, member RAS oncogene family.
    
 
 0.940
RAB10
RAB10, member RAS oncogene family.
    
 
 0.921
NUDT3
Nudix hydrolase 3.
    
   0.888
BET1
Bet1 golgi vesicular membrane trafficking protein.
    
 
 0.881
ENSVPAP00000006432
annotation not available
    
 
 0.878
ENSVPAP00000005781
annotation not available
    
 
 0.860
RAB3C
RAB3C, member RAS oncogene family.
    
 
 0.855
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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