STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC7DEP domain containing 7. (486 aa)    
Predicted Functional Partners:
ABHD12B
Abhydrolase domain containing 12B.
   
  
 0.836
FAM177A1
Family with sequence similarity 177 member A1.
      
 0.815
ENTPD8
Ectonucleoside triphosphate diphosphohydrolase 8.
      
 0.789
KRT23
Keratin 23.
      
 0.786
TMEM47
Transmembrane protein 47.
      
 0.777
ENSVPAP00000010077
annotation not available
      
 0.764
ENSVPAP00000010872
annotation not available
      
 0.752
MAML3
Mastermind like transcriptional coactivator 3.
   
  
 0.679
ACTR6
Actin related protein 6.
   
  
 0.649
TCP11L1
T-complex 11 like 1.
 
    
 0.640
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.