STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM23Tripartite motif containing 23. (574 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
   
 0.996
ITSN2
Intersectin 2.
    
 0.989
ITSN1
Intersectin 1.
    
 0.937
ENSVPAP00000003396
annotation not available
  
 0.910
ENSVPAP00000009924
annotation not available
  
 0.842
ENSVPAP00000001582
annotation not available
   
 0.836
TRIM42
Tripartite motif containing 42.
    
 0.820
ARF6
ADP ribosylation factor 6.
   
 
0.813
ENSVPAP00000002731
annotation not available
   
 
0.808
BIRC6
Baculoviral IAP repeat containing 6.
  
 
 0.800
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.