STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE1CPhosphodiesterase 1C. (725 aa)    
Predicted Functional Partners:
CALML4
Calmodulin like 4.
    
 0.961
PDE1A
Phosphodiesterase 1A.
  
 
 
0.933
GUCY1B1
Guanylate cyclase 1 soluble subunit beta 1.
     
 0.929
GUCY2C
Guanylate cyclase 2C.
     
 0.926
ENSVPAP00000011449
annotation not available
     
 0.920
ENSVPAP00000005167
annotation not available
     
 0.919
PDE6D
Phosphodiesterase 6D.
     
 0.916
ENTPD8
Ectonucleoside triphosphate diphosphohydrolase 8.
     
 0.914
AMPD1
Adenosine monophosphate deaminase 1.
     
 0.911
PTRHD1
peptidyl-tRNA hydrolase domain containing 1.
     
 0.906
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.