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rpoA protein (Chlamydomonas reinhardtii) - STRING interaction network
"rpoA" - RNA polymerase alpha subunit in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoARNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (550 aa)    
Predicted Functional Partners:
rpl2
Ribosomal protein L2 (278 aa)
   
 
  0.992
rpl5
Ribosomal protein L5; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (187 aa)
 
 
  0.992
rps3
Ribosomal protein S3 (712 aa)
   
   
  0.990
rpl16
Ribosomal protein L16 (136 aa)
 
   
  0.989
rpoC2
RNA polymerase beta’ subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (3120 aa)
   
  0.986
rpoB-2
RNA polymerase beta subunit II; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (626 aa)
 
  0.985
RNP3
Small nucleolar ribonucleoprotein U3 component (182 aa)
   
 
  0.983
RPS9
Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit (190 aa)
   
 
  0.983
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (257 aa)
   
 
  0.983
RPL11
Ribosomal protein L11 (178 aa)
   
 
  0.980
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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