STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCM1Regulator of CO2-responsive genes. (699 aa)    
Predicted Functional Partners:
CAH1
Carbonic anhydrase.
      
 0.775
CAH3
Intracellular carbonic anhydrase, alpha type.
      
 0.739
LciA
Low-CO2 inducible protein LCIA.
    
 
 0.724
Pmp1
Low-CO2-inducible protein.
      
 0.633
HLA3
Uncharacterized protein.
    
 
 0.620
CCP1
Low-CO2-inducible chloroplast envelope protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.609
LIP-36G2
Low-CO2-inducible chloroplast envelope protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.609
ca1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
      
 0.609
LCI1
Membrane protein.
      
 0.538
LciC
Low-CO2 inducible protein LCIC.
      
 0.537
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90
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