SFU19492.1 protein (Algoriphagus locisalis) - STRING interaction network

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Score

SFU19492.1

ATP-binding cassette protein, ChvD family. (559 aa)

Predicted Functional Partners:

rpsO

0.844

rplW

0.839

rpsE

0.836

rplD

0.831

rplU

0.825

rpsC

0.824

rplM

0.824

rpmH

0.820

rplR

0.820

rplC

0.820

Your Current Organism:

Algoriphagus locisalis

NCBI taxonomy Id: 305507
Other names: A. locisalis, Algoriphagus locisalis Yoon et al. 2005, DSM 23445, JCM 12597, KCTC 12310, strain MSS-170

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFU19492.1	rplC	SAMN04489724_0134	SAMN04489724_1557	ATP-binding cassette protein, ChvD family.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.820
SFU19492.1	rplD	SAMN04489724_0134	SAMN04489724_1556	ATP-binding cassette protein, ChvD family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.831
SFU19492.1	rplM	SAMN04489724_0134	SAMN04489724_4466	ATP-binding cassette protein, ChvD family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.824
SFU19492.1	rplR	SAMN04489724_0134	SAMN04489724_1541	ATP-binding cassette protein, ChvD family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.820
SFU19492.1	rplU	SAMN04489724_0134	SAMN04489724_0361	ATP-binding cassette protein, ChvD family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.825
SFU19492.1	rplW	SAMN04489724_0134	SAMN04489724_1555	ATP-binding cassette protein, ChvD family.	Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.839
SFU19492.1	rpmH	SAMN04489724_0134	SAMN04489724_0205	ATP-binding cassette protein, ChvD family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.820
SFU19492.1	rpsC	SAMN04489724_0134	SAMN04489724_1551	ATP-binding cassette protein, ChvD family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.824
SFU19492.1	rpsE	SAMN04489724_0134	SAMN04489724_1540	ATP-binding cassette protein, ChvD family.	SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.836
SFU19492.1	rpsO	SAMN04489724_0134	SAMN04489724_1309	ATP-binding cassette protein, ChvD family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.844
rplC	SFU19492.1	SAMN04489724_1557	SAMN04489724_0134	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette protein, ChvD family.	0.820
rplC	rplD	SAMN04489724_1557	SAMN04489724_1556	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN04489724_1557	SAMN04489724_4466	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	SAMN04489724_1557	SAMN04489724_1541	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	SAMN04489724_1557	SAMN04489724_0361	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplC	rplW	SAMN04489724_1557	SAMN04489724_1555	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpmH	SAMN04489724_1557	SAMN04489724_0205	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.986
rplC	rpsC	SAMN04489724_1557	SAMN04489724_1551	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsE	SAMN04489724_1557	SAMN04489724_1540	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplC	rpsO	SAMN04489724_1557	SAMN04489724_1309	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997